XLinkDB 6.0
cross-linked protein residues

XLinkDB Help Page!


Example dataset:

TSV File: Keller Bioinformatics (2018) Reference: Keller A. et al. Bioinformatics (2018) ( PDF )   ( HTML )


Video Tutorials


  1. Introduction to XLinkDB


  2. Initiate Modeling and Docking


  3. Uploading Data to XLinkDB


  4. Viewing Structures Automatically Mapped to Cross-Links on XLinkDB


  5. Viewing Cross-Link Jwalk SASDs and Proximal Ligands in the Context of Structures on XLinkDB


  6. Viewing Intra-Protein Quantitation Clusters for H. sapiens and M. musculus Proteins on XLinkDB 5.0


  7. Viewing Structure Site Confidence Scores on XLinkDB 6.0



View Interactive Walk-through in Cytoscape.js :



Documentation and Frequently Asked Questions

Basic Information

Inputing Data and Starting Your Analysis

Protein Modeling and Docking

Network Analysis and Interactomes

Species Level Interactions


If you do not find your question here, please email XLinkDB at uw dot edu with your questions/comments.

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